Welcome to the VarSeq CNV Caller Tutorial!ΒΆ


Updated: December 4th, 2017

Level: Advanced

Version: 1.4.7 or higher

Product: VarSeq

This tutorial covers the basics of the VarSeq CNV calling algorithm with an emphasis on visualization and interpretation of results.


To complete this tutorial you will need to download and unzip the following file, which includes a starter project.


This workflow requires an active VarSeq license with the CNV Caller on Target Regions feature included. You can go to Discover VarSeq or email info@goldenhelix.com to request an evaluation license with the CNV functionality included.

Files included in the above ZIP file:

  • VarSeq CNV Caller Tutorial - Starter project containing the variants and coverage dat a for 48 samples over 31 tumor suppressor and oncogenes mutated frequently in myeloid malignancies.


VarSeq version 1.4.7 was used to create this tutorial. While every attempt will be made to keep this content relevant, it is possible that certain features or icons may change with newer releases.