3.10.19. Match Panels (Per Sample)

This algorithm determines matches for each sample between the gene annotations of each variant and a user imported list of gene panels unique to each sample.

Requirements

Each sample must be paired with a list of gene panel names during the data import, see Import Sample Information from Text File. Each panel name must correspond to a gene panel specified in the Manage Gene Panels interface. This can be accessed by clicking Tools -> Manage Gene Panels in VarSeq.

This algorithm requires first annotating and classifying variants using a gene annotation source.

After clicking OK you will be prompted to select a Gene Names field to be used for matching.

After clicking OK a second time you will be prompted to select the sample Gene Panel Names field which contains the list of gene panels that will be matched against.

Output

A sample specific boolean column indicating whether the gene annotation for each variant matches at least one of the values given.