3.11.11. Latest Sample CNV Assessment

This algorithm annotates the variants of the project with the latest assessment from a variant catalog.

Requirements

  • Type Field: The assessment catalog must have a CNV Type field.

  • Last Edited Unix: The assessment catalog must have a Last Edited Unix field which is used to determine the latest evaluation.

Options

The user may specify the following options:

  • Minimum similarity coefficient threshold is met: Matching annotation regions selected based on the specified minimum similarity coefficient

  • Current record is completely within annotation record: Matching annotation region selected if the CNV is completely within annotation record

  • Current record completely contains annotation record: Matching annotation region selected if the CNV completely contains the annotation record

  • Match CNV Type: This option will cause the algorithm to match on CNV type.

  • Field of CNV Type: The name of the CNV type field to match on.

  • Include counts of matching CNVs: This option will include counts for each CNV type.

Output

A Field is created for each field in the assessment catalog with the values from the most recent assessment saved.