3.11.11. Latest Sample CNV Assessment¶

This algorithm annotates the variants of the project with the latest assessment from a variant catalog.

Requirements¶

Type Field: The assessment catalog must have a CNV Type field.
Last Edited Unix: The assessment catalog must have a Last Edited Unix field which is used to determine the latest evaluation.

The user may specify the following options:

Minimum similarity coefficient threshold is met: Matching annotation regions selected based on the specified minimum similarity coefficient
Current record is completely within annotation record: Matching annotation region selected if the CNV is completely within annotation record
Current record completely contains annotation record: Matching annotation region selected if the CNV completely contains the annotation record
Match CNV Type: This option will cause the algorithm to match on CNV type.
Field of CNV Type: The name of the CNV type field to match on.
Include counts of matching CNVs: This option will include counts for each CNV type.

A Field is created for each field in the assessment catalog with the values from the most recent assessment saved.