VarSeq Manual

Version 1.4.4 (Previous versions)

Copyright © 2000-2017 Golden Helix, Inc.

The VarSeq® software streamlines the process of annotating and filtering variants obtained from next generation sequencing pipelines, allowing both research scientists and clinicians to find variants of interest in a very efficient and straightforward manner. VarSeq simplifies the user interface and provides a scalable architecture featuring repeatable workflows, note taking and reporting, and filter parameter prototyping.


VarSeq would not exist without the generous contributions of many people. We would particularly like to thank all of the VarSeq alpha testers and everyone who has given VarSeq a try and provided feedback.

Trademarks Used

VarSeq is a registered trademark of Golden Helix. Affymetrix, GeneChip and the Affymetrix logo are registered trademarks used by Affymetrix, Inc. Microsoft, Microsoft SQL, Transact-JQL, Excel, Access and ODBC are registered trademarks of Microsoft, Inc. Stat/Transfer is a registered trademark of Circle Systems, Inc. Oracle, Oracle PL-SQL and SQL Server are registered trademarks of Oracle, Inc. IBM and DB2 are registered trademarks of IBM. SAS is a registered trademark of SAS, Inc. Sybase is a registered trademark of Sybase,Inc. Any other incidentally used names that are registered trademarks are trademarks of their respective owners.